Dynamic regulatory networks
-------------------------

Reconstruct the dynamic regulatory networks using iDREM for the dynamic graphs. 


.. automodule:: UNAGI.dynamic_regulatory_networks
   :members:
   :undoc-members:
   :show-inheritance:

.. autosummary::
    :toctree: _autosummary
    :nosignatures:

    UNAGI.dynamic_regulatory_networks.processIDREM.runIdrem


Gene weights accumulation
-------------------------

Identify dynamic genes and accumulate gene weights.


.. automodule:: UNAGI.dynamic_regulatory_networks
   :members:
   :undoc-members:
   :show-inheritance:
    
.. autosummary::
    :toctree: _autosummary
    :nosignatures:
    
    UNAGI.dynamic_regulatory_networks.processTFs.updataGeneTablesWithDecay