UNAGI documentations
===================================

**UNAGI** is a Python package for end-to-end deciphering single-cell temporal dynamics and *in-silico* drug perturbations. This tool is built on top of `PyTorch <https://pytorch.org/>`_ and `scanpy <https://scanpy.readthedocs.io/en/stable/index.html>`_. It is developed and maintained by the `Ding Lab <https://junding.lab.mcgill.ca/>`_  at McGill University. 

.. image:: _static/UNAGI_overview.png
   :width: 800
   :alt: Model piepline

If you find the tool is useful to your study, please consider citing the `UNAGI manuscript <https://assets.researchsquare.com/files/rs-3676579/v1_covered_2dc4a452-a1f2-47a2-acb1-f816276a9e07.pdf>`_. 

Check out the :doc:`usage` section for further information, including
how to :ref:`installation` the project.

.. note::

   This project is under active development.


.. toctree::
   :maxdepth: 2
   :caption: Getting started with UNAGI:

   usage.md
   notebooks
   api