Plottings
---------------------

Functions to visualize the outputs of UNAGI, including cell type compositions, latent representations, the heatmaps of hierarchical markers, and dendrogram of individual stages.


.. automodule:: UNAGI.plotting
   :members:
   :undoc-members:
   :show-inheritance:

.. autosummary::
    :toctree: _autosummary
    :nosignatures:
    
    UNAGI.plotting.plot_cell_embeddings.plot_stages_latent_representation
    UNAGI.plotting.plot_cell_embeddings.plot_with_colormap
    UNAGI.plotting.plot_cell_type_composition.cell_type_composition
    UNAGI.plotting.plot_stage_dendrogram.plot_hc_dendrogram
    UNAGI.plotting.plot_hierarchical_markers_heatmap.hierarchical_static_markers_heatmap