UNAGI.plotting.plot_hierarchical_markers_heatmap.hierarchical_static_markers_heatmap

UNAGI.plotting.plot_hierarchical_markers_heatmap.hierarchical_static_markers_heatmap(adata, stage, cluster, level, n_genes, stage_key, celltype_key, protein_encoding_gene=True, min_logfoldchange=1, dpi=None, save=None)[source]

Plot the heatmap of the hierarchical static markers of the chosen cluster and its siblings.

Parameters:

  • adata (AnnData object) – Annotated data matrix.

  • stage (int) – Time point of the data.

  • cluster (int) – Cluster id.

  • level (int) – Level of the cluster.

  • n_genes (int) – Number of genes to plot.

  • stage_key (str) – Key for stage column in adata.obs.

  • celltype_key (str) – Key for cell type column in adata.obs.

  • protein_encoding_gene (bool, optional) – Whether to plot only protein encoding genes. The default is True.

  • min_logfoldchange (int, optional) – Minimum log fold change. The default is 1.

  • dpi (int, optional) – The default is None.

  • save (str, optional) – Path to save the figure. The default is None.

Returns:

None