Examples and tutorials

This contains examples and tutorials

Contents:

• Tutorials
  • Dataset preparation
  • Register the training data
  • Configure the model architecture and training parameters, and start training
  • Run downstream tasks to analyze the UNAGI outcomes
  • Hyper-parameters for clustering parameters optimization (CPO)
  • Designing iDREM hyper-parameters
• Examples
  • Running UNAGI on the example dataset
  • UNAGI ablations
  • Using UNAGI to predict post-treatment gene expressions
  • Using UNAGI with a customized pathway or drug database for in-silico perturbation
  • UNAGI walkthrough
• Figures and tables for the manuscrip and supplementary information
  • Supplementary Figures and Tables