Supplementary Figures and Tables
This section provides the scripts to reproduce the supplementary figures and tables in the manuscript.
Supplementary Figures
- Statistics of the snRNA-seq IPF dataset
- Dendrograms for individual IPF stages
- Heatmap of level 0 hierarchical static markers in the Fibroblast Adventitial cluster at the control stage.
- Heatmap of level 4 hierarchical static markers in the Fibroblast Adventitial cluster at the control stage.
- Visualizing the overlapping between dynamic proteins and markers using the Venn plot
- UMAPs of the whole snRNA-seq IPF dataset based on the learned latent representation ‘Z’
- UMAPs of the whole snRNA-seq IPF dataset based on the PCA embeddings
- Compare the in-silico and real perturbation outcomes on top differentially expressed genes
- COVID-19 cell type composition
- Dotplots of COVID-19 cell type marekrs
- Dendrograms of the COVID-19 dataset
- Dot plots of the gene-weight markers in the IPF dataset and enrichment analysis of top weighted gene markers
- Visualizing the benchmarking results using UMAPs