UNAGI documentations

UNAGI is a Python package for end-to-end deciphering single-cell temporal dynamics and in-silico drug perturbations. This tool is built on top of PyTorch and scanpy. It is developed and maintained by the Ding Lab at McGill University.

If you find the tool is useful to your study, please consider citing the UNAGI manuscript.

Check out the Usage section for further information, including how to Installation the project.

Note

This project is under active development.

Getting started with UNAGI:

• Usage
  • Installation
  • Example data
• Examples and tutorials
  • Tutorials
  • Examples
  • Figures and tables for the manuscrip and supplementary information
• API Documentations
  • UNAGI launcher
  • The model architecture of UNAGI
  • Trainer of UNAGI
  • Dynamic graphs
  • Dynamic regulatory networks
  • Gene weights accumulation
  • Perturbations
  • Analyse pertubration results
  • Marker discovery
  • Plottings