UNAGI.UNAGI_tool.UNAGI.register_iDREM_parameters

UNAGI.register_iDREM_parameters(Normalize_data='Log_normalize_data', Minimum_Absolute_Log_Ratio_Expression=0.5, Convergence_Likelihood=0.001, Minimum_Standard_Deviation=0.5)[source]

The function to register the parameters for the iDREM analysis. The parameters will be used to perform the iDREM analysis.

Parameters:

  • Normalize_data (str) – the method to normalize the data. Chosen from ‘Log_normalize_data’ (log normalize the data), ‘Normalize_data’ (normalize the data), and ‘No_normalize_data’ (do not normalize the data).

  • Minimum_Absolute_Log_Ratio_Expression (float) – the minimum absolute log ratio expression for the iDREM analysis.

  • Convergence_Likelihood (float) – the convergence likelihood for the iDREM analysis.

  • Minimum_Standard_Deviation (float) – the minimum standard deviation for the iDREM analysis.