UNAGI.UNAGI_tool.UNAGI.run_UNAGI

UNAGI.run_UNAGI(idrem_dir, CPO=True, resume=False, resume_iteration=None)[source]

The function to launch the model training. The model will be trained iteratively. The number of iterations is specified by the max_iter parameter in the setup_training function.

Parameters:
  • idrem_dir (str) – the directory to the iDREM tool which is used to reconstruct the temporal dynamics.

  • transcription_factor_file (str) – the directory to the transcription factor file. The transcription factor file is used to perform the CPO analysis.