UNAGI.marker_discovery.dynamic_markers.getTopMarkersFromIDREM

UNAGI.marker_discovery.dynamic_markers.getTopMarkersFromIDREM(path, background, cutoff=None, topN=None, one_dist=False)

Get the top markers for each track from IDREM results. :param path: the directory to the IDREM results. :type path: str :param background: the background gene expression change :type background: np.array :param cutoff: the cutoff for p-value. Default is None. :type cutoff: float :param topN: the number of top markers to return. Default is None. :type topN: int :param one_dist: whether to consider all the background gene expression changes as one distribution. Default is False. :type one_dist: bool

Returns:

out (dict) – a dictionary of top markers for each track.