UNAGI.marker_discovery.dynamic_markers.runGetProgressionMarkercsv

UNAGI.marker_discovery.dynamic_markers.runGetProgressionMarkercsv(directory, background, save_dir, topN=None, cutoff=None)[source]

Get the top markers for each track from IDREM results and save as a csv file.

Parameters:

  • directory (str) – the directory to the IDREM results.

  • background (str) – the directory to the background gene expression change.

  • cutoff (float) – the cutoff for p-value. Default is None.

  • topN (int) – the number of top markers to return. Default is None.

  • save_dir (str) – the directory to save the csv file.

Returns:

None