UNAGI.marker_discovery.dynamic_markers.runGetProgressionMarker

UNAGI.marker_discovery.dynamic_markers.runGetProgressionMarker(directory, background, cutoff=0.05, topN=None)[source]

Get the top markers for each track from IDREM results.

Parameters:

  • directory (str) – the directory to the IDREM results.

  • background (str) – the directory to the background gene expression change.

  • cutoff (float) – the cutoff for p-value. Default is 0.05.

  • topN (int) – the number of top markers to return. Default is None.

Returns:

out (dict) – a dictionary of top markers for each track.