UNAGI.marker_discovery.dynamic_markers.runGetProgressionMarker_one_dist

UNAGI.marker_discovery.dynamic_markers.runGetProgressionMarker_one_dist(directory, background, size, cutoff=0.05, topN=None)[source]

Get the top markers for each track from IDREM results and consider the whole background as one distribution.

Parameters:

  • directory (str) – the directory to the IDREM results.

  • background (str) – the directory to the background gene expression change.

  • cutoff (float) – the cutoff for p-value. Default is 0.05.

  • topN (int) – the number of top markers to return. Default is None.

Returns:

out – a dictionary of top markers for each track.