Dynamic regulatory networks

Reconstruct the dynamic regulatory networks using iDREM for the dynamic graphs.

UNAGI.dynamic_regulatory_networks.processIDREM.runIdrem

train IDREM model and save the results in iterative training with midpath and iteration

Gene weights accumulation

Identify dynamic genes and accumulate gene weights.

UNAGI.dynamic_regulatory_networks.processTFs.updataGeneTablesWithDecay

update gene weights and decay the weight of genes that are not important in this iteration