Plottings

Functions to visualize the outputs of UNAGI, including cell type compositions, latent representations, the heatmaps of hierarchical markers, and dendrogram of individual stages.

The plotting module contains functions for visualizing the results of UNAGI.

UNAGI.plotting.plot_cell_embeddings.plot_stages_latent_representation	Plot the latent representation of the cells colored by cell type and leiden clusters.
UNAGI.plotting.plot_cell_embeddings.plot_with_colormap	The color scheme the cell types are plotted with.
UNAGI.plotting.plot_cell_type_composition.cell_type_composition	Plot the cell type composition of each stage
UNAGI.plotting.plot_stage_dendrogram.plot_hc_dendrogram	Plot the dendrogram of the hierarchical static markers of each stage.
UNAGI.plotting.plot_hierarchical_markers_heatmap.hierarchical_static_markers_heatmap	Plot the heatmap of the hierarchical static markers of the chosen cluster and its siblings.